R 3.5.0不适用于Ubuntu 18.04

我刚刚在我的testbed笔记本电脑上安装了Ubuntu 18.04。 总新安装(选择’最小’选项)。 我做的前两件事是安装R 3.5R Studio 1.1.453 。 如果我打开R的全新安装并让它闲置30分钟左右我最终得到错误"Error: Unable to establish connection with R session"

此时我无法在R Studio做任何事情,我必须将其重新加载并重新加载所有内容以继续编程。 互联网搜索显示,由于人们在使用GNOME的Ubuntu机器上安装R/R Studio ,因此这个问题一再出现。 我不确定GNOME是否是根本原因,但它很有趣。

有人解决了这个吗? 或者你可能在Ubuntu 18.04上运行R 3.5没有问题。 请告诉我。 在此问题导致我的系统崩溃之前,我只能运行30分钟左右。 我的系统是Bionic Beaver的全新安装,只有R就可以了。 奇怪的。

——对于那些想知道的人——

R的安装是通过

 sudo add-apt-repository "deb https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/" sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E084DAB9 sudo apt-get update sudo apt-get install r-base r-base-dev 

和R Studio通过此链接通过Ubuntu软件中心安装 https://download1.rstudio.org/rstudio-xenial-1.1.453-amd64.deb

据推测,R Studio的预览版本可以修复此问题(TBD) https://s3.amazonaws.com/rstudio-ide-build/desktop/trusty/amd64/rstudio-1.2.792-amd64.deb

我在干净的Ubuntu 18.04 LTS VM上做了一些步骤:

 sudo add-apt-repository "deb https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/" sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E084DAB9 sudo apt-get update sudo apt-get install r-base r-base-dev 

然后试着跑R

然后安装RStudio:

 cd ~/Downloads wget https://download1.rstudio.org/rstudio-xenial-1.1.453-amd64.deb sudo apt-get install ./rstudio-xenial-1.1.453-amd64.deb 

它启动并正常运行:

RStudio与R 3.5.1在Ubuntu 18.04 LTS上

之后我尝试了更新的版本,它也有效。

以下是与R相关的包裹清单:

 $ dpkg -l | grep "^ii r-" ii r-base 3.5.1-1bionic all GNU R statistical computation and graphics system ii r-base-core 3.5.1-1bionic amd64 GNU R core of statistical computation and graphics system ii r-base-dev 3.5.1-1bionic all GNU R installation of auxiliary GNU R packages ii r-base-html 3.5.1-1bionic all GNU R html docs for statistical computing system functions ii r-cran-boot 1.3-20-1.1cranBionic0 all GNU R package for bootstrapping functions from Davison and Hinkley ii r-cran-class 7.3-14-2cranArtful0~ubuntu18.04.1~ppa1 amd64 GNU R package for classification ii r-cran-cluster 2.0.7-1-1cranBionic0 amd64 GNU R package for cluster analysis by Rousseeuw et al ii r-cran-codetools 0.2-15-1.1cranBionic0 all GNU R package providing code analysis tools ii r-cran-foreign 0.8.70-1cranArtful0~ubuntu18.04.1~ppa1 amd64 GNU R package to read/write data from other stat. systems ii r-cran-kernsmooth 2.23-15-3cranArtful0~ubuntu18.04.1~ppa1 amd64 GNU R package for kernel smoothing and density estimation ii r-cran-lattice 0.20-35-1cranBionic0 amd64 GNU R package for 'Trellis' graphics ii r-cran-mass 7.3-50-1bionic0 amd64 GNU R package of Venables and Ripley's MASS ii r-cran-matrix 1.2-14-1cranBionic0 amd64 GNU R package of classes for dense and sparse matrices ii r-cran-mgcv 1.8-24-1bionic0 amd64 GNU R package for multiple parameter smoothing estimation ii r-cran-nlme 3.1.137-1cranBionic0 amd64 GNU R package for (non-)linear mixed effects models ii r-cran-nnet 7.3-12-2cranArtful0~ubuntu18.04.1~ppa1 amd64 GNU R package for feed-forward neural networks ii r-cran-rpart 4.1-13-1cranBionic0 amd64 GNU R package for recursive partitioning and regression trees ii r-cran-spatial 7.3-11-2cranArtful0~ubuntu18.04.1~ppa1 amd64 GNU R package for spatial statistics ii r-cran-survival 2.42-6-1cran1bionic0 amd64 GNU R package "Survival Analysis" ii r-doc-html 3.5.1-1bionic all GNU R html manuals for statistical computing system ii r-recommended 3.5.1-1bionic all GNU R collection of recommended packages [metapackage] 

和他们的来源:

 $ apt-cache policy $(dpkg -l | grep "^ii r-" | awk '{print $2}') r-base: Installed: 3.5.1-1bionic Candidate: 3.5.1-1bionic Version table: *** 3.5.1-1bionic 500 500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ Packages 100 /var/lib/dpkg/status 3.5.0-1bionic 500 500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ Packages 3.4.4-1ubuntu1 500 500 http://ru.archive.ubuntu.com/ubuntu bionic/universe amd64 Packages 500 http://ru.archive.ubuntu.com/ubuntu bionic/universe i386 Packages r-base-core: Installed: 3.5.1-1bionic Candidate: 3.5.1-1bionic Version table: *** 3.5.1-1bionic 500 500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ Packages 100 /var/lib/dpkg/status 3.5.0-1bionic 500 500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ Packages 3.4.4-1ubuntu1 500 500 http://ru.archive.ubuntu.com/ubuntu bionic/universe amd64 Packages r-base-dev: Installed: 3.5.1-1bionic Candidate: 3.5.1-1bionic Version table: *** 3.5.1-1bionic 500 500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ Packages 100 /var/lib/dpkg/status 3.5.0-1bionic 500 500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ Packages 3.4.4-1ubuntu1 500 500 http://ru.archive.ubuntu.com/ubuntu bionic/universe amd64 Packages 500 http://ru.archive.ubuntu.com/ubuntu bionic/universe i386 Packages r-base-html: Installed: 3.5.1-1bionic Candidate: 3.5.1-1bionic Version table: *** 3.5.1-1bionic 500 500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ Packages 100 /var/lib/dpkg/status 3.5.0-1bionic 500 500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ Packages 3.4.4-1ubuntu1 500 500 http://ru.archive.ubuntu.com/ubuntu bionic/universe amd64 Packages 500 http://ru.archive.ubuntu.com/ubuntu bionic/universe i386 Packages r-cran-boot: Installed: 1.3-20-1.1cranBionic0 Candidate: 1.3-20-1.1cranBionic0 Version table: *** 1.3-20-1.1cranBionic0 500 500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ Packages 100 /var/lib/dpkg/status 1.3-20-1.1 500 500 http://ru.archive.ubuntu.com/ubuntu bionic/universe amd64 Packages 500 http://ru.archive.ubuntu.com/ubuntu bionic/universe i386 Packages r-cran-class: Installed: 7.3-14-2cranArtful0~ubuntu18.04.1~ppa1 Candidate: 7.3-14-2cranArtful0~ubuntu18.04.1~ppa1 Version table: *** 7.3-14-2cranArtful0~ubuntu18.04.1~ppa1 500 500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ Packages 100 /var/lib/dpkg/status 7.3-14-2build1 500 500 http://ru.archive.ubuntu.com/ubuntu bionic/universe amd64 Packages r-cran-cluster: Installed: 2.0.7-1-1cranBionic0 Candidate: 2.0.7-1-1cranBionic0 Version table: *** 2.0.7-1-1cranBionic0 500 500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ Packages 100 /var/lib/dpkg/status 2.0.6-2build1 500 500 http://ru.archive.ubuntu.com/ubuntu bionic/universe amd64 Packages r-cran-codetools: Installed: 0.2-15-1.1cranBionic0 Candidate: 0.2-15-1.1cranBionic0 Version table: *** 0.2-15-1.1cranBionic0 500 500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ Packages 100 /var/lib/dpkg/status 0.2-15-1.1 500 500 http://ru.archive.ubuntu.com/ubuntu bionic/universe amd64 Packages 500 http://ru.archive.ubuntu.com/ubuntu bionic/universe i386 Packages r-cran-foreign: Installed: 0.8.70-1cranArtful0~ubuntu18.04.1~ppa1 Candidate: 0.8.70-1cranArtful0~ubuntu18.04.1~ppa1 Version table: *** 0.8.70-1cranArtful0~ubuntu18.04.1~ppa1 500 500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ Packages 100 /var/lib/dpkg/status 0.8.69-1build1 500 500 http://ru.archive.ubuntu.com/ubuntu bionic/universe amd64 Packages r-cran-kernsmooth: Installed: 2.23-15-3cranArtful0~ubuntu18.04.1~ppa1 Candidate: 2.23-15-3cranArtful0~ubuntu18.04.1~ppa1 Version table: *** 2.23-15-3cranArtful0~ubuntu18.04.1~ppa1 500 500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ Packages 100 /var/lib/dpkg/status 2.23-15-3build1 500 500 http://ru.archive.ubuntu.com/ubuntu bionic/universe amd64 Packages r-cran-lattice: Installed: 0.20-35-1cranBionic0 Candidate: 0.20-35-1cranBionic0 Version table: *** 0.20-35-1cranBionic0 500 500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ Packages 100 /var/lib/dpkg/status 0.20-35-1build1 500 500 http://ru.archive.ubuntu.com/ubuntu bionic/universe amd64 Packages r-cran-mass: Installed: 7.3-50-1bionic0 Candidate: 7.3-50-1bionic0 Version table: *** 7.3-50-1bionic0 500 500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ Packages 100 /var/lib/dpkg/status 7.3-49-1 500 500 http://ru.archive.ubuntu.com/ubuntu bionic/universe amd64 Packages r-cran-matrix: Installed: 1.2-14-1cranBionic0 Candidate: 1.2-14-1cranBionic0 Version table: *** 1.2-14-1cranBionic0 500 500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ Packages 100 /var/lib/dpkg/status 1.2-12-1 500 500 http://ru.archive.ubuntu.com/ubuntu bionic/universe amd64 Packages r-cran-mgcv: Installed: 1.8-24-1bionic0 Candidate: 1.8-24-1bionic0 Version table: *** 1.8-24-1bionic0 500 500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ Packages 100 /var/lib/dpkg/status 1.8-23-1cranBionic0 500 500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ Packages 1.8-23-1 500 500 http://ru.archive.ubuntu.com/ubuntu bionic/universe amd64 Packages r-cran-nlme: Installed: 3.1.137-1cranBionic0 Candidate: 3.1.137-1cranBionic0 Version table: *** 3.1.137-1cranBionic0 500 500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ Packages 100 /var/lib/dpkg/status 3.1.131-3build1 500 500 http://ru.archive.ubuntu.com/ubuntu bionic/universe amd64 Packages r-cran-nnet: Installed: 7.3-12-2cranArtful0~ubuntu18.04.1~ppa1 Candidate: 7.3-12-2cranArtful0~ubuntu18.04.1~ppa1 Version table: *** 7.3-12-2cranArtful0~ubuntu18.04.1~ppa1 500 500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ Packages 100 /var/lib/dpkg/status 7.3-12-2build1 500 500 http://ru.archive.ubuntu.com/ubuntu bionic/universe amd64 Packages r-cran-rpart: Installed: 4.1-13-1cranBionic0 Candidate: 4.1-13-1cranBionic0 Version table: *** 4.1-13-1cranBionic0 500 500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ Packages 100 /var/lib/dpkg/status 4.1-13-1 500 500 http://ru.archive.ubuntu.com/ubuntu bionic/universe amd64 Packages r-cran-spatial: Installed: 7.3-11-2cranArtful0~ubuntu18.04.1~ppa1 Candidate: 7.3-11-2cranArtful0~ubuntu18.04.1~ppa1 Version table: *** 7.3-11-2cranArtful0~ubuntu18.04.1~ppa1 500 500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ Packages 100 /var/lib/dpkg/status 7.3-11-2build1 500 500 http://ru.archive.ubuntu.com/ubuntu bionic/universe amd64 Packages r-cran-survival: Installed: 2.42-6-1cran1bionic0 Candidate: 2.42-6-1cran1bionic0 Version table: *** 2.42-6-1cran1bionic0 500 500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ Packages 100 /var/lib/dpkg/status 2.42-3-1cranBionic0 500 500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ Packages 2.41-3-2build1 500 500 http://ru.archive.ubuntu.com/ubuntu bionic/universe amd64 Packages r-doc-html: Installed: 3.5.1-1bionic Candidate: 3.5.1-1bionic Version table: *** 3.5.1-1bionic 500 500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ Packages 100 /var/lib/dpkg/status 3.5.0-1bionic 500 500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ Packages 3.4.4-1ubuntu1 500 500 http://ru.archive.ubuntu.com/ubuntu bionic/universe amd64 Packages 500 http://ru.archive.ubuntu.com/ubuntu bionic/universe i386 Packages r-recommended: Installed: 3.5.1-1bionic Candidate: 3.5.1-1bionic Version table: *** 3.5.1-1bionic 500 500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ Packages 100 /var/lib/dpkg/status 3.5.0-1bionic 500 500 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ Packages 3.4.4-1ubuntu1 500 500 http://ru.archive.ubuntu.com/ubuntu bionic/universe amd64 Packages 500 http://ru.archive.ubuntu.com/ubuntu bionic/universe i386 Packages 

所以问题就在你身边。