在tcsh中获取sh文件是非法的

解决了那个之后，我尝试使用sh脚本编辑csh.cshrc 。 我在最后添加了以下几行：

 . /etc/fsl/5.0/fsl.sh setenv FREESURFER_HOME/home/User/freesurfer source $FREESURFER_HOME/SetUpFreeSurfer.csh 

但我收到错误/usr/sbin/.: Permission denied. 。 我尝试将其更改为source /etc/fsl/5.0/fsl.sh bt然后我收到错误Illegal variable name. 。

我想要的文件是：

 # FSL configuration file # - to be sourced by the user, typically in .bashrc or equivalent # - note that the user should set # Written by Mark Jenkinson, FMRIB Analysis Group, University of Oxford # Modified for Debian by Michael Hanke  # clean out previous fsl PATH components: DO NOT EDIT THE NEXT TWO LINES PATH=$( echo $PATH | tr ":" "\n" | grep -v "/usr/lib/fsl/" | tr -s "\n" ":" | sed 's/:$//') LD_LIBRARY_PATH=$( echo $LD_LIBRARY_PATH | tr ":" "\n" | grep -v "/usr/lib/fsl/" | tr -s "\n" ":" | sed 's/:$//') #### Set up standard FSL user environment variables #### # Debian has a fixed FSLDIR FSLDIR=/usr/share/fsl/5.0 # Possum is installed in the same directory POSSUMDIR=$FSLDIR # add the fsl binary path to the search path PATH=$PATH:/usr/lib/fsl/5.0 # The following variable selects the default output image type # Legal values are: # NIFTI, NIFTI_PAIR, NIFTI_GZ, NIFTI_PAIR_GZ # This would typically be overwritten in ${HOME}/.fsl/fsl.sh if the user # wished to write files with a different format FSLOUTPUTTYPE=NIFTI_GZ # Comment out the definition of FSLMULTIFILEQUIT to enable # FSL programs to soldier on after detecting multiple image # files with the same basename ( eg epi.hdr and epi.nii ) FSLMULTIFILEQUIT=TRUE # The following variables specify paths for programs and can be changed # or replaced by different programs, by default set sensible Debian-defaults FSLTCLSH=/usr/bin/tclsh FSLWISH=/usr/bin/wish FSLBROWSER=/etc/alternatives/x-www-browser # The following variables are used for running code in parallel across # several machines ( ie for FDT ) # for a cluster engine setup see below FSLLOCKDIR= FSLMACHINELIST= FSLREMOTECALL= # If set, tell FSL to use Sun Gridengine to submit jobs instead of running them # directly on the machine. If unset, no attempt will be made to utilize # gridengine, even if it is running. By default SGE is not utilized. #FSLPARALLEL=1 # Mail setup for gridengine jobs. See man qsub (-m option) for all possible # settings. By default no email is sent. FSLCLUSTER_MAILOPTS="n" # default queue for job submissions #FSLCLUSTER_DEFAULT_QUEUE="all.q" ################################################### #### DO NOT ADD ANYTHING BELOW THIS LINE #### ################################################### export FSLDIR POSSUMDIR PATH FSLMULTIFILEQUIT FSLOUTPUTTYPE FSLTCLSH \ FSLWISH FSLBROWSER FSLLOCKDIR FSLMACHINELIST FSLREMOTECALL # Configure the linker search path for Debian FSLs internal shared libraries LD_LIBRARY_PATH=/usr/lib/fsl/5.0${LD_LIBRARY_PATH:+:${LD_LIBRARY_PATH}} export LD_LIBRARY_PATH # load user configuration if [ -f "${HOME}/.fslconf/fsl.sh" ] ; then "${HOME}/.fslconf/fsl.sh" ; fi 

我该如何运行这个脚本？

Answer 1

问题是你所采购的文件是tcsh不支持的基础/ shisms的混合，从你如何声明变量开始：

 PATH=$( echo $PATH | tr ":" "\n" | grep -v "/usr/lib/fsl/" | tr -s "\n" ":" | sed 's/:$//') 

这在tcsh中不起作用。 您必须将其修改为：

 set PATH = `echo $PATH | tr ":" "\n" | grep -v "/usr/lib/fsl/" | tr -s "\n" ":" | sed 's/:$//'` 

在这种情况下，有两个变化。 你必须明确地说你要使用set设置一个变量而tcsh不支持$(...)子shell，你需要使用反引号`...` 。

此外，if..else是错误的，它应该是：

 if (-f "${HOME}/.fslconf/fsl.sh") then "${HOME}/.fslconf/fsl.sh" ; endif 

应该这样做。 完整的参考资料可以在oocities中找到。

哦，忘记添加，因为set是显式的，你不需要任何export VAR 。 只需删除它们。